Examples
========

This page will host runnable examples for core workflows.

Planned examples
----------------

1. Minimal modular pipeline run with default configuration.
2. Custom stage selection via orchestrator dispatcher.
3. Custom algorithm registration through registry pattern.

Placeholder status
------------------

Examples are intentionally lightweight now while refactor foundation is finalized.

Example template (to be expanded)
---------------------------------

.. code-block:: python

   # Placeholder skeleton
   # from VmaxBuilder.api import VmaxBuilderAPI
   # from VmaxBuilder.config import load_config
   #
   # config = load_config()
   # api = VmaxBuilderAPI(config=config)
   # api.load(...)
   # api.run(stages=["expression", "model", "protein_abundance", "allocation", "vmax"])

See also
--------

- :doc:`getting_started`
- :doc:`use_cases`
- :doc:`VmaxBuilder (API)`