Use Cases
=========

This page captures practical scenarios for VmaxBuilder usage.

Research scenarios
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- Build condition-specific reaction capacities from expression and GEM inputs.
- Compare capacity profiles across tissues or perturbations.
- Integrate custom Kcat strategies for organism-specific workflows.

Developer scenarios
-------------------

- Add new preprocessing or allocation methods using enum + registry integration.
- Validate module outputs with diagnostics-first failure handling.
- Extend shared scaffold with module-specific metadata.

Current scope
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Initial use cases are placeholders and will be expanded as refactor slices land.

Related pages
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- :doc:`getting_started`
- :doc:`examples`
- :doc:`VmaxBuilder (API)`