ProteomicsInputConfig

class VmaxBuilder.config.dataclasses.ProteomicsInputConfig(id_type: str = 'uniprot', level: str = 'gene', transformation_state: str = 'log', imputation_strategy: str = 'weighted_gene_median', fallback_imputation_strategy: str = 'weighted_sample_median')

Generated: validation needed.

Description:

Proteomics input option group used by direct-proteomics protein flow.

Parameters:

• id_type (str) – Identifier provider for proteomics features.

• level (str) – Gene or transcript level granularity.

• transformation_state (str) – Data transform state, e.g. log or linear.

• imputation_strategy (str) – Primary imputation strategy.

• fallback_imputation_strategy (str) – Fallback imputation strategy.

Public Methods

id_type
level
transformation_state
imputation_strategy
fallback_imputation_strategy