IdentifierTranslationServiceProtocol

class VmaxBuilder.expression.implementation.IdentifierTranslationServiceProtocol(*args, **kwargs)

Generated: validation needed.

Description:

Protocol for expression-level identifier translation and transcript mapping.

Public Methods

build_transcript_gene_dataframe(…)	Generated: validation needed.
translate_identifiers(…)	Generated: validation needed.

translate_identifiers(identifiers: Sequence[str], *, source_id_type: str, target_id_type: str, species: str | None, provider: str, max_workers: int, batch_size: int) → IdentifierTranslationResult

Generated: validation needed.

Description:

Translate identifier collection across namespaces.

Parameters:

• identifiers (list[str]) – Source identifiers.

• source_id_type (str) – Source identifier namespace.

• target_id_type (str) – Target identifier namespace.

• species (str | None) – Optional species hint.

• provider (str) – Translation provider key.

• max_workers (int) – Maximum worker threads.

• batch_size (int) – Identifier batch size.

Returns:

IdentifierTranslationResult – Mapping output.

build_transcript_gene_dataframe(transcript_ids: Sequence[str], *, transcript_id_type: str, target_gene_id_type: str, species: str | None, provider: str, max_workers: int, batch_size: int) → DataFrame

Generated: validation needed.

Description:

Build transcript-to-gene mapping dataframe.

Parameters:

• transcript_ids (list[str]) – Transcript identifiers.

• transcript_id_type (str) – Transcript namespace.

• target_gene_id_type (str) – Target gene namespace.

• species (str | None) – Optional species hint.

• provider (str) – Translation provider key.

• max_workers (int) – Maximum worker threads.

• batch_size (int) – Identifier batch size.

Returns:

pd.DataFrame – Transcript mapping table.