ModelPreprocessingResult

class VmaxBuilder.model.preprocessing.ModelPreprocessingResult[source]

Generated: validation needed. Description:

Output container for model preprocessing stage. Holds the closed irreversible model and the index mapping used downstream.

Parameters:

  • irreversible_model (cobra.Model) – Closed irreversible cobra model (boundary reactions zeroed, reversible reactions split into _f/_r pairs).

  • rev2irrev (list[list[int]]) – Mapping from original reaction index (1-based) to one or two irreversible reaction indices.

Public Methods

clear(…)

copy(…)

fromkeys(…)

Create a new dictionary with keys from iterable and values set to value.

get(…)

Return the value for key if key is in the dictionary, else default.

items(…)

keys(…)

pop(…)

If the key is not found, return the default if given; otherwise, raise a KeyError.

popitem()

Remove and return a (key, value) pair as a 2-tuple.

setdefault(…)

Insert key with a value of default if key is not in the dictionary.

update(…)

If E is present and has a .keys() method, then does: for k in E: D[k] = E[k] If E is present and lacks a .keys() method, then does: for k, v in E: D[k] = v In either case, this is followed by: for k in F: D[k] = F[k]

values(…)