utils

Modules

custom_exceptions	This module contains custom exceptions for the MetabolismModeler package.
custom_logging	This file contains a custom logger with different print levels and specific formatting. It also contains a progress bar function that can be used to show progress of a loop. The decorator_provide_time_information can be used to wrap a function and provide time together with a starting and finished message, that works congruently with the logger.
extra_utils
file_handling	Module containing functions for file handling operations, namely saving with tries for many different datatypes.
lookup_cache	Thread-safe, disk-backed key-value cache for external API lookups.
transformations	Transformation utilities for converting dataframes between log and linear spaces.
type_hinting	This module contains type hinting utilities for the VmaxBuilder project.