Examples

This page will host runnable examples for core workflows.

Planned examples

  1. Minimal modular pipeline run with default configuration.

  2. Custom stage selection via orchestrator dispatcher.

  3. Custom algorithm registration through registry pattern.

Placeholder status

Examples are intentionally lightweight now while refactor foundation is finalized.

Example template (to be expanded)

# Placeholder skeleton
# from VmaxBuilder.api import VmaxBuilderAPI
# from VmaxBuilder.config import load_config
#
# config = load_config()
# api = VmaxBuilderAPI(config=config)
# api.load(...)
# api.run(stages=["expression", "model", "protein_abundance", "allocation", "vmax"])

See also