Use Cases

This page captures practical scenarios for VmaxBuilder usage.

Research scenarios

  • Build condition-specific reaction capacities from expression and GEM inputs.

  • Compare capacity profiles across tissues or perturbations.

  • Integrate custom Kcat strategies for organism-specific workflows.

Developer scenarios

  • Add new preprocessing or allocation methods using enum + registry integration.

  • Validate module outputs with diagnostics-first failure handling.

  • Extend shared scaffold with module-specific metadata.

Current scope

Initial use cases are placeholders and will be expanded as refactor slices land.