gpr_preprocessing

Generated: validation needed.

Description:

Reusable preprocessing utilities for parsing GPR rules into independently functioning protein (IFP) complexes.

Classes

TranscriptIfpExpansionOutcome

Generated: validation needed.

Functions

build_gene_to_transcripts_mapping(...)	Generated: validation needed.
build_ifp_mapping_from_gpr_rules(gpr_rules)	Generated: validation needed.
build_reaction_ifp_indexes(model, ifp_mapping)	Generated: validation needed.
calculate_ifp_expansion_count(transcript_choices)	Generated: validation needed.
clear_simplification_cache()	Generated: validation needed.
expand_gene_ifp_to_transcript_ifps(gene_ifp, ...)	Generated: validation needed.
get_simplification_cache_info()	Generated: validation needed.
get_unique_gpr_rules(cobra_model)	Generated: validation needed.
simplify_gpr_rule(gpr_rule)	Generated: validation needed.
simplify_gpr_rule_cached(gpr_rule)	Generated: validation needed.